Comments (1)
Hi @kmegq,
You can select a different reference genome using the ref
parameter in the single_sample
function as described in the README. Make sure to install previously the required reference genome on SigProfilerMatrixGenerator as described here.
Hope that helps and sorry for the late reply.
Best,
Marcos
from sigprofilersinglesample.
Related Issues (19)
- Test tool compatibility on Windows and Linux HOT 1
- ID decomposition support? HOT 2
- implementation for mutational catalogue as input HOT 4
- gzip VCF files HOT 1
- DBS and Indels signature missing
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- Assignment of mutational signatures with SigProfilerSingleSample
- Error when running SigProfilerSingleSample. HOT 4
- SigProfilerSingleSample not used by CNV signature HOT 1
- IndexError when run with GRCh38 HOT 2
- DBS and ID mutational signatures? HOT 1
- Sigprofiler single sample decomposition profile doesn't match match COSMIC signature database? HOT 1
- Can ID signatures be run on vcfs from build 38? HOT 1
- Input differs than output of SigProfilerExtractor HOT 11
- minimum threshold for reported signatures? HOT 1
- New signatures on COSMIC website HOT 7
- Missing Subfolders HOT 1
- S should be uppercase for filename "signatures.txt" in spss.py script HOT 8
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from sigprofilersinglesample.