Comments (1)
Dear @bzhang19,
Thanks for your interest. As mentioned in previous issues, we are in the process of retiring SigProfilerSingleSample, and we strongly recommend users to use our new SigProfilerAssignment tool, which has support for different reference genomes and COSMIC versions. Regarding your question, SigProfilerSingleSample default signature database corresponds to COSMIC v3 and GRCh37.
I hope this helps, and please reopen the ticket if you have further questions.
from sigprofilersinglesample.
Related Issues (20)
- Input differs than output of SigProfilerExtractor HOT 11
- minimum threshold for reported signatures? HOT 1
- New signatures on COSMIC website HOT 7
- Missing Subfolders HOT 1
- S should be uppercase for filename "signatures.txt" in spss.py script HOT 8
- ID decomposition support? HOT 2
- implementation for mutational catalogue as input HOT 4
- gzip VCF files HOT 1
- DBS and Indels signature missing
- Vcf input doesn't work with other signatures than default ones HOT 10
- Can this tool be used with a different genome? HOT 1
- Assignment of mutational signatures with SigProfilerSingleSample
- Error when running SigProfilerSingleSample. HOT 4
- SigProfilerSingleSample not used by CNV signature HOT 1
- IndexError when run with GRCh38 HOT 2
- Can ID signatures be run on vcfs from build 38? HOT 1
- KeyError: '7_pvalue' HOT 1
- index out of range HOT 3
- copy number signature HOT 1
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