Warning when making dotplot from gseaResult about enrichplot HOT 19 CLOSED

Has this problem been solved?

no

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How is this solved? I still get this warning.

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Same, I'm still getting this all the time.

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So it is fixed now? How can i adjust myplot?

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Please use the latest version on github.

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I am using the latest version and yet I still get this warning.
Any other advice on how to solve this?

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Same

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I'm using the 1.10.2 version, latest, and I'm still getting this error all the time.

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it should be fixed in recent version.

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Has this problem been solved?

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@bounlu I am also getting the same error when I am running dotplot.

I am following the vignette posted on this link:
https://learn.gencore.bio.nyu.edu/rna-seq-analysis/gene-set-enrichment-analysis/

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I am also getting the same error, how can we solve it?

ego <- enrichGO(gene = sig_genes,
universe = all_genes,
keyType = "ENSEMBL",
OrgDb = org.Hs.eg.db,
ont = "BP",
pAdjustMethod = "BH",
qvalueCutoff = 0.05,
readable = TRUE)

dotplot(ego, showCategory=50)

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Same here :/ Still getting the same error.

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Got the same error, but one can also just set the argument...

dotplot(myResults, showCategory=15, orderBy="GeneRatio")

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@alexandruioanvoda the latest version of enrichplot in github is 1.11.3

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I must be looking in the wrong place because The latest version in GitHub says 1.10.1 (https://github.com/YuLab-SMU/enrichplot) ?
I still tried updating enrichplot and am still getting this error: (even if I try specifying the orderBy argument)

barplot(ego_BP_up, showCategory=20)
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] :
replacement has length zero
In addition: Warning message:
In rep(yes, length.out = len) : 'x' is NULL so the result will be NULL

Update:
Trying the Devel version 1.11.3 still gives the same error. 😪

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@nat-kreiling The class of your ego_BP_up should be enrichResult.

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I use 1.15.3, and the res from enrichKEGG() is "enrichResult" obj, but I got the same warning

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I use 1.15.3, and the res from enrichKEGG() is "enrichResult" obj, but I got the same warning

Please provide your data.

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