wangd / scidb-hdf5 Goto Github PK

Purpose:
Load one image array from sxrcom10-r0232.h5 LCLS data into SciDB. The image is located at the path:/Configure:0000/Run:0000/CalibCycle:0000/Camera::FrameV1/SxrBeamline.0:Opal1000.1/image

image is an array (1-D, 0-42246) of arrays (2D, 0-1023 x 0-1023) of uint16.

This issue will be considered closed when the image contents can be queried in some fashion from SciDB. The image will most likely be represented as a single 3d array of 1024x1024x42247.

The loadhdf operator does not currently return anything. It would be nice to return some sort of descriptive status or error message. This would provide some confirmation of success (and perhaps provide the resultant array parameters), or failure (what went wrong and some advice on how to correct things).

It's not clear how to provide the information. It's a DDL command. The "LoadLibrary" operator in SciDB does not seem to return anything on success or failure either.

In trying to build SciDB-HDF5, the following error occurred using cmake:

nbest@ec2-50-16-20-226:/SciDB-HDF5/build$ cmake
-DSCIDB_SRC_DIR=/scidb-11.06.0.2877 ..
-- Could NOT find LIBSZ (missing: SZ_LIB)
Assuming your HDF5 installation works w/o libsz.
-- Could NOT find SCIDB (missing: SCIDB_INCLUDE_ARRAY SCIDB_INCLUDE_CFG)
-- Could NOT find CFITSIO (missing: CFITSIO_INCLUDE_DIR CFITSIO_LIBRARY)
-- Could NOT find CCFITS (missing: CCFITS_INCLUDE_DIR CCFITS_LIBRARY)
Disabling FITS loader
CMake Error: The following variables are used in this project, but
they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the
CMake files:
CCFITS_LIBRARY (ADVANCED)
linked by target "testFits" in directory /nfs/home/nbest/SciDB-HDF5/src
CFITSIO_LIBRARY (ADVANCED)
linked by target "testFits" in directory /nfs/home/nbest/SciDB-HDF5/src

-- Configuring incomplete, errors occurred!