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cat

Connectome Analysis Toolbox

catmaid

Collaborative Annotation Toolkit for Massive Amounts of Image Data

caveclient

cfflib

Connectome File Format Library for Multi-Modal Neuroimaging Data and Metadata

connectomebrowser

Multi-Scale Web Connectome Browser

connectomewiki

Connectome Wiki is a knowledge base for macro- and mesoscale brain region and brain structural connectivity information across species. Employing modern semantic wiki technology, it serves as collaborative platform as well.

emannotationschemas

Repository to hold schemas for annotations of volumetric imaging data focused on EM

funlib.segment

Tools to segment graphs and volumes

groundtruth-drosophila-vnc

Segmented anisotropic ssTEM dataset of neural tissue

imageprocessing

general pipeline components used for image processing

lazyflow

lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation

microcircuit

Neural microcircuit analysis

morphforge

A python library for simulating small networks of multicompartmental neurons

nibabel

Python package to access a cacophony of neuro-imaging file formats

polars-book

Book documentation of the Polars DataFrame library

pyconto

Python Connectome Toolbox

sopnet

neuron reconstruction pipeline

starter-default

techpreview

workflows implemented with volumina and lazyflow

three.js

JavaScript 3D library

unidesign

Ideas to use HDF5 to store multi-level, multi-modal neuroscience data

util

handy things in here, needed by other modules