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rbedtools

R wrapper for Bedtools

redoc

[NOTE: Project in suspended animation for now] Reversible Reproducible Documents

remap-pipeline

As the ReMap project expands dramatically and regulatory catalogs for other species are requested, it becomes essential to enable joint efforts between the ReMap team and external teams. This is essential for future collaborative production efforts. Briefly, our pipelines uses SnakeMake either in a Conda or Singularity environment depending on the HPC resources, where Torque and Slurm managers are both supported

reviz

Lightweight visualization for recount3

rnaseq-normalization

Normalization of RNA-seq gene expression

rstudio-docker

A custom docker file used to make a singularity image for Biowulf

scpop

shp

single-cell-topic-models

Embedding-based topic models for scRNA-seq

singularityrstudio

snakemake-horizontal-rulegroup

toy example of how to bundle multiple runs of the same rule in snakemake

spotipy

A light weight Python library for the Spotify Web API

stat220-labs

Pre-lab exercises for STAT 220 labs at the University of St Thomas

symbolic-methods-project

talon

Technology agnostic long read analysis pipeline for transcriptomes

tfsbp

the-boys-rank-electronic-albums-from-2019

transabyss-singularity

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

tximport

Import and summarize transcript-level estimates for gene-level analysis

upsetplot

Draw UpSet plots with Matplotlib

velociraptor

Toolkit for Single-Cell Velocity

vinay-swamy.github.io

vscode-singularity