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Hi there 👋 Vikash K Singh

Hi, I am Vikash K Singh, Postdoc Associate at University of Minnesota, USA. I am interested in Metagenomics, Viromics, automation and machine learning.

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vikash84's Projects

krakentools icon krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

lathe icon lathe

A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

lava icon lava

LAVA: Longitudinal Analysis of Viral Alleles

lcastar icon lcastar

Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree

learn-data-science-for-free icon learn-data-science-for-free

This repositary is a combination of different resources lying scattered all over the internet. The reason for making such an repositary is to combine all the valuable resources in a sequential manner, so that it helps every beginners who are in a search of free and structured learning resource for Data Science. For Constant Updates Follow me in Twitter.

learn-python icon learn-python

📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.

learn_bash icon learn_bash

Toy files and training material to introduce Linux to molecular biologists

learngo icon learngo

1000+ Hand-Crafted Go Examples, Exercises, and Quizzes

learnrust icon learnrust

❤️ I started learning Rust, if you wanna join me, welcome!

lissero icon lissero

In silico serotype prediction for Listeria monocytogenes

longread_tutorials icon longread_tutorials

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

m.viridis icon m.viridis

Script for creating custom trees with etetoolkit

magpy icon magpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

make_prokka_db icon make_prokka_db

A script for downloading complete sequences from genbank and make blast database for use with prokka

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