vikash84's Projects
KCRI CGE Bacterial Analysis Pipeline
Simple Kraken2 Nextflow pipeline
A tool to help create custom `kraken` databases
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Virus discovery pipeline compatible with long-read sequencing (Nanopore) and short-read sequencing (Illumina)
Virus discovery pipeline compatible with long-read sequencing (Nanopore) and short-read sequencing (Illumina)
partical session introducing MUGQIC DNAseq pipeline
A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
Manual workflows for making phylogenetic trees in jupyter notebooks
LAVA: Longitudinal Analysis of Viral Alleles
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
Scripts for lowest common taxon analysis
This repositary is a combination of different resources lying scattered all over the internet. The reason for making such an repositary is to combine all the valuable resources in a sequential manner, so that it helps every beginners who are in a search of free and structured learning resource for Data Science. For Constant Updates Follow me in Twitter.
📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.
Toy files and training material to introduce Linux to molecular biologists
1000+ Hand-Crafted Go Examples, Exercises, and Quizzes
Getting started with Docker
Learning the Variant Call Format
❤️ I started learning Rust, if you wanna join me, welcome!
Courses and lesson content for linuxjourney.com
Learn the skills required to sysadmin a remote Linux server from the commandline.
In silico serotype prediction for Listeria monocytogenes
A catalogue of available long read sequencing data analysis tools
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
Luslab nextflow modules
Script for creating custom trees with etetoolkit
Code Repository for Machine Learning with PyTorch and Scikit-Learn
Practice and tutorial-style notebooks covering wide variety of machine learning techniques
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
A script for downloading complete sequences from genbank and make blast database for use with prokka