vikash84 Goto Github PK

demovir

Taxonomic classification of viruses at Order and Family level

den-im

Dengue virus genotyping from shotgun and targeted metagenomics​ - A nextflow pipeline

dfast_core

DDBJ Fast Annotation and Submission Tool

dfast_vrl

Viral genome annotation and data submission tool to DDBJ

diamond_workflow

Trivial DIAMOND + ORF calling workflow

dickson_16s_sop

Materials for the Dickson Lab SOP for Analysis of 16S rRNA Gene Amplicon Data

discover-virome

discover-virome: identify and quantify viruses from metagenomic assemblies

diversitools

Tool for analysing viral diversity from High Throughput Sequencing

divirusity

Quantify viral genetic diversity within hosts from NGS data (paired-end raw reads) without needing to reconstruct full-length haplotypes.

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

docker_pipelines

Nextflow/Docker pipelines for "easy use"

dominion

Automated monitoring and logging of sequencing runs performed on the GridION sequencer.

drosophila_assembly_pipelines

Pipelines for Drosophila genome assembly and analysis

dry-bench-skills-for-researchers

Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.

dtpcourse2019

RNA-seq tutorial

easybuild-singularity-tutorial

EasyBuild - Singularity tutorial

easyseq_covid19

Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.

ecobiotec-ngs-tutorial

16S amplicon NGS - Hands-on

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

ekidna

Assembly based core genome SNP alignments for bacteria

email_python

Python code to perform email related tasks and analyze email data

emd531_gen-epi-inf-dis

environmental_metagenomics

A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.

eoulsan

A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)

epidope

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

epidope-1

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

epitope-prediction

extract_genes_abricate

Small script to use ABRicate output to extract genes from genome assemblies, reverse complement if necessary, and print to a file

falcon

A tool to infer metagenomic sample composition