vikash84's Projects
Day by day codes for my YouTube course on Python Programming
100 data puzzles for pandas, ranging from short and simple to super tricky (60% complete)
Snakemake pipeline for amplicon sequencing using dada2
Analysis of microbiome samples in CWL using QIIME2
Pipelines for 16S rRNA gene analysis
2019 Alliance for Global Health and Science, Makerere University, Variant Analysis
2019 September UCD Microbial Community Analysis Workshop - Amplicons
๐ Data Visualization Techniques course for DS studies in Winter 2020/21
Repository for March 2, 2022 "Data visualization using ggtree" Workshop by Taylor Davedow
30 days of Python programming challenge is a step by step guide to learn Python programming language in 30 days.
A script to convert an ABRicate summary to a suitable format for phandango visualisation
Advanced R: a book
Advanced linux course for biologists and genomics data formats
Material for advanced Python course 2019
demo container for AFV
Annotated Genome Aligner
AIV_seeker is optimized for detecting and identification of Avian Influenza Virus from metagenomics data.
Heatmap visualisation tool for viral metagenomic data
Collection of helper scripts for amplicon sequence analysis
Recipes for data analysis of amplicon sequencing data
Sorts amplicons from Nanopore sequencing data based on similarity
๏ฟผPipeline for processing OLC 16S MiSeq runs with QIIME 2
:poultry_leg: Pipeline for processing OLC 16S MiSeq runs with QIIME 2
A set of protocols and pipelines for construction and analysis of 16S rRNA amplicon libraries
AmpLify is an automated amplicon sequencing analysis pipeline built for SWIFT Biosciences products
R script to generate heatmaps from AMR and Virulence Factor presence/absence data