Topic: pacbio-data Goto Github
Some thing interesting about pacbio-data
Some thing interesting about pacbio-data
pacbio-data,SMP: A Salmonella Methylation analysis Pipeline
User: aukehaver
pacbio-data,🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Organization: bcgsc
pacbio-data,A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
User: comery
Home Page: https://academic.oup.com/gigascience/article/6/12/gix104/4564465?login=false
pacbio-data,Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
User: conchoecia
pacbio-data,SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes.
Organization: deepomicslab
pacbio-data,De novo repeat inference from long reads
User: fcunial
pacbio-data,a shell code getter for genomics alignments for the illumina and long reads from pacbio and the oxfordnanopore
User: gauravearn
pacbio-data,awk simulators for the pacbiohifi assembly reading from the graphs. easy to use awk for the coverage and the length files. udpating later on with the complete awk functionalities for the compilation into the direct kernels.
User: gauravearn
pacbio-data,making bcftools filtering easy. bcftools_filter which will allow for the faster filtering of the variant calls according to the allelic depth and the tags using simple to overlap approaches as compare to implementing the regular patterns.
User: gauravearn
pacbio-data,a combination of the gawk and the awk basic compiler to create a function that will estimate the aligned genome fractions from the paf alignment of the genome long reads to the genome. This includes multiple functions which also allow for the filtering of the quality alignments before estimating the genome length coverage.
User: gauravearn
pacbio-data,genome sorting and plotting the length alignment from the lastz alignment for the node calculations right before you import them for the calculations.
User: gauravearn
pacbio-data,A regular expression based polyATGC trimmer for the long reads or the fastq reads extremely fast and returns a fasta and also a dataframe for the sequence classification
User: gauravearn
pacbio-data,A implication of stringr package to calculate the pattern detection in R using the stringR package for the pacbio and the oxford nanopore reads
User: gauravearn
pacbio-data,a shorter version of the long_read_polyATGC_trimmer after implementing a array recompile and storing the variables while running a subtle part of the recursion.
User: gauravearn
pacbio-data,a pacbiohifi analyzer for the pacbio hifi reads and gives all the information for the pacbiohifi reads from raw to the graph alignments
User: gauravearn
pacbio-data,a pacbiohifi read check for the quick view of the read types and making it easy for the fasta manipulations and read extractions. You can spawn also this in rust.
User: gauravearn
pacbio-data,a slurm configuration analytical pipline for the analysis of the pacbiohifi sequencing genomes using the verkko, hifiasm and the genomeasm4pg. only provide the link to the sequencing or the files with the folder and rest it will do the work
User: gauravearn
pacbio-data,a complete workflow that can be dockerized for the long read assembly, it allows for the genome assembly update as well as it allows for the assembly from the start. if you have the illumina reads it allows for the genome mapping also
User: gauravearn
pacbio-data,Inter-sample analysis of SQANTI classifications
User: jacobwindsor
pacbio-data,A workflow for processing CCS reads of AMF to ASVs using DADA2
User: katjako
pacbio-data,Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
Organization: niaid
pacbio-data,Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Organization: pacificbiosciences
pacbio-data,Long read based human genomic structural variation detection with cuteSV
User: tjianghit
pacbio-data,rMETL - realignment-based Mobile Element insertion detection Tool for Long read
User: tjianghit
pacbio-data,The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
User: xapple
pacbio-data,LRSDAY: Long-read Sequencing Data Analysis for Yeasts
User: yjx1217
Home Page: https://yjx1217.github.io/Yeast_PacBio_2016/software/
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