Topic: enhanced-sampling Goto Github
Some thing interesting about enhanced-sampling
Some thing interesting about enhanced-sampling
enhanced-sampling,Prediction of magnesium binding sites in RNA molecules using GCMC/MD (Updated version: https://github.com/mackerell-lab/GCMC_PME)
User: aakognole
enhanced-sampling,Weighted Ensemble simulation framework in Python
Organization: adicksonlab
Home Page: https://adicksonlab.github.io/wepy/index.html
enhanced-sampling,Variationally enhanced sampling for single-particle langevin dynamics with neural network bias potentials and path collective variables. Based on OpenMM + PyTorch.
User: apallath
Home Page: https://apallath.github.io/pyves
enhanced-sampling,asyncmd is a library to write concurrent code for setup, run and analysis of molecular dynamics simulations using pythons async/await synthax.
Organization: bio-phys
enhanced-sampling,Code and example notebook demostrating usage of Tangent Space Least Adaptive Clustering algorithm for molecular dynamics simulations with known collective variables
User: buenfilstats
enhanced-sampling,Collective variables library for molecular simulation and analysis programs
Organization: colvars
Home Page: http://colvars.github.io/
enhanced-sampling,A one stop destination of open source tools in Computer Aided Drug Design (CADD)
User: cpayal
Home Page: https://cpayal.github.io/caddtools/
enhanced-sampling,An OpenMM plugin for slicing nonbonded interactions based on particle classification
User: craabreu
Home Page: https://craabreu.github.io/openmm-nonbonded-slicing/
enhanced-sampling,Extended Phase-Space Simulations with OpenMM
User: craabreu
Home Page: https://craabreu.github.io/openxps/
enhanced-sampling,Unified Free Energy Dynamics (UFED) simulations with OpenMM
User: craabreu
Home Page: https://craabreu.github.io/ufedmm/
enhanced-sampling,🦜 DISCOTRESS 🦜 is a software package to simulate and analyse the dynamics on arbitrary Markov chains
User: danieljsharpe
enhanced-sampling,C++ implementation of metadynamics simulation on a potential energy surface
User: danieljsharpe
enhanced-sampling,
Organization: delemottelab
enhanced-sampling,These are codes of toy physics models that contain building blocks for understanding the concept behind EVCCPMC
User: echanj
enhanced-sampling,Data-driven discovery of linear molecular probes with optimal selective affinity for PFAS in water
Organization: ferg-lab
enhanced-sampling,Permutationally invariant networks for enhanced sampling (PINES)
Organization: ferg-lab
enhanced-sampling,WESTPA modified scripts with NAMD
User: lexin-chen
enhanced-sampling,A unified framework for machine learning collective variables for enhanced sampling simulations
User: luigibonati
enhanced-sampling,scalable molecular simulation
Organization: molmod
Home Page: https://molmod.github.io/psiflow/
enhanced-sampling,Using supervised machine learning to build collective variables for accelerated sampling
User: msultan
enhanced-sampling,Using neural networks for enhanced sampling in computational biophysics
User: msultan
enhanced-sampling,Enhanced protein mutational sampling using time-lagged variational autoencoders
User: msultan
enhanced-sampling,Machine Learning Transition State Analysis (MLTSA) suite with Analytical models to create data on demand and test the approach on different types of data and ML models.
User: pedrojuanbj
Home Page: https://mltsa.readthedocs.io/en/latest/
enhanced-sampling,Development version of plumed 2
Organization: plumed
Home Page: https://www.plumed.org
enhanced-sampling,Deep learning for collective variables.
User: rangsimanketkaew
Home Page: https://lubergroup.pages.uzh.ch/deepcv/
enhanced-sampling,Useful Collective Variables for OpenMM
Organization: redesignscience
Home Page: https://redesignscience.github.io/cvpack/latest
enhanced-sampling,Platform-agnostic OpenMM Forces
Organization: redesignscience
Home Page: https://redesignscience.github.io/openmm-cpp-forces/
enhanced-sampling,This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration free energies or ligand binding free energies.
Organization: rinikerlab
Home Page: https://rinikerlab.github.io/reeds/
enhanced-sampling,Input files for self-rbfe
User: sheenam1509
enhanced-sampling,
Organization: shuklagroup
enhanced-sampling,Wrapper for HOOMD-blue simulation data into DLPack data structures
Organization: ssageslabs
enhanced-sampling,Wrapper for LAMMPS simulation data into DLPack data structures
Organization: ssageslabs
enhanced-sampling,Plugin for OpenMM providing simulation data wrappers as DLPack data structures
Organization: ssageslabs
enhanced-sampling,Python Suite for Advanced General Ensemble Simulations
Organization: ssageslabs
enhanced-sampling,Software Suite for Advanced General Ensemble Simulations
Organization: ssagesproject
enhanced-sampling,Files for PLUMED Masterclass-22-11
Organization: valsson-group
enhanced-sampling,Simple tools for obtaining time from biased molecular dynamics simulations
Organization: valsson-group
enhanced-sampling,A python package for simulating sampling behaviors of enhanced sampling simulations
User: wehs7661
enhanced-sampling,Additional plumed plugins
User: weihelloworld
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