Comments (4)
Marius1311
commented on June 2, 2024
Can you try installing pyGPCCA from main?
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jonas2612
commented on June 2, 2024
I just tried it and I got the same error
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jonas2612
commented on June 2, 2024
A fix could be replacing categories.cat.categories = names with categories.cat.rename_categories(names) in cellrank/estimators/terminal_states/_term_states_estimator.py, line 619. That just worked for at least syntactically
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michalk8
commented on June 2, 2024
This has been fixed in #1079, please install CellRank from main.
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Related Issues (20)
- Fix linting
- cr.pl.gene_trends() gives empty plots HOT 3
- `g.plot_fate_probabilities` fails for `same_plot=False` HOT 1
- Update documentation to include CellRank 2 preprint
- Inconsistent `time_key` types between `RealTimeKernel.from_moscot()` and `TemporalProblem.prepare()` HOT 2
- AttributeError with cr.pl.gene.trends HOT 3
- Pseudotime differences HOT 2
- estimators.GPCCA.plot_macrostates() gives error for legend plotting HOT 7
- AttributeError: 'GPCCA' object has no attribute 'compute_fate_probabilities' HOT 2
- vk has no attribute plot_projection? HOT 7
- vk.plot_projection(): KeyError: "Unable to find a basis in `adata.obsm['X_umap']` or `adata.obsm['umap']`." HOT 2
- Estimating Fate Probabilities and Driver Genes----Uncover driver genes: RuntimeError: No stationary distribution found in `.eigendecomposition['stationary_dist']`. HOT 4
- AttributeError: 'NoneType' object has no attribute 'compute_transition_matrix' HOT 5
- Identify states -> I get ValueError: Sparse implementation is only available for `method='krylov'`. HOT 3
- How to delete gridlines in figures HOT 2
- Request for Intestinal organoid dataset(scEU-seq) HOT 3
- Setting of vk.plot_projection() HOT 2
- ValueError: setting an array element with a sequence HOT 4
- P-value for cellrank.pl.log_odds HOT 2
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