Comments (4)
HI @JuliaChristiaanse, please try installing scVelo from main.
from cellrank.
HI @Marius1311 I had already installed scVelo, I re-installed it, and the problem still persisted. Any other suggestions?
from cellrank.
yes, how did you install scVelo? This looks like a bug with pandas 2, which is solved on scVelo's main branch, so you need to install from there, rather than from pip.
from cellrank.
Closing this issue, installing scVelo from the master branch on GitHub should resolve this. In the future, a patch release in scVelo will resolve this.
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Related Issues (20)
- Fix linting
- cr.pl.gene_trends() gives empty plots HOT 3
- `g.plot_fate_probabilities` fails for `same_plot=False` HOT 1
- Update documentation to include CellRank 2 preprint
- Inconsistent `time_key` types between `RealTimeKernel.from_moscot()` and `TemporalProblem.prepare()` HOT 2
- AttributeError with cr.pl.gene.trends HOT 3
- Pseudotime differences HOT 2
- estimators.GPCCA.plot_macrostates() gives error for legend plotting HOT 7
- AttributeError: 'GPCCA' object has no attribute 'compute_fate_probabilities' HOT 2
- vk has no attribute plot_projection? HOT 7
- vk.plot_projection(): KeyError: "Unable to find a basis in `adata.obsm['X_umap']` or `adata.obsm['umap']`." HOT 2
- Estimating Fate Probabilities and Driver Genes----Uncover driver genes: RuntimeError: No stationary distribution found in `.eigendecomposition['stationary_dist']`. HOT 4
- AttributeError: 'NoneType' object has no attribute 'compute_transition_matrix' HOT 5
- Identify states -> I get ValueError: Sparse implementation is only available for `method='krylov'`. HOT 3
- How to delete gridlines in figures HOT 2
- Request for Intestinal organoid dataset(scEU-seq) HOT 3
- Setting of vk.plot_projection() HOT 2
- P-value for cellrank.pl.log_odds HOT 2
- Tolerance not exposed HOT 1
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