Comments (7)
I downgraded to pandas 1.3.5 because of a similar issue when using scVelo and I still get this error with cellrank 2.0
I think this relates more to scVelo than to CellRank, try installing scVelo from main.
from cellrank.
Ok using pandas < 2.0.0 solved the issue.
from cellrank.
@michalk8, would still be good to fix this, users should not have to downgrade pandas here.
from cellrank.
This is an scvelo
issue, should be fixed there.
from cellrank.
Ah, is it fixed on scVelo's main already?
from cellrank.
I downgraded to pandas 1.3.5 because of a similar issue when using scVelo and I still get this error with cellrank 2.0
from cellrank.
I installed the dev version of CellRank (v2.0.1) and pandas 1.5.3 and now plotting works fine.
from cellrank.
Related Issues (20)
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- In cases the same cluster is estimated as initial and terminal states HOT 4
- The order of row names of adata.obsm['lineages_fwd'] HOT 1
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