Command line or api-like automation? about clustvis HOT 3 CLOSED

Thanks, good idea! There is no official API at the moment, but you can check the source file global.R and try to run the functions plotPCA and plotHeatmap separately. The variable data$inputSaved contains all parameters that are given to the functions.

from clustvis.

Just to let you know that I am in the process of refactoring the code, it is not yet made into a package (no documentation yet etc.), but you can try it out and let me know if you have any comments. You can use something like this to generate the plots:

source("https://raw.githubusercontent.com/taunometsalu/ClustVis/master/global_package.R")
d = importData("~/Downloads/0_myfile.csv")
proc = processData(d)

#pca:
pca = generatePCA(proc)
savePCA(pca, file = "~/Downloads/0_pca.pdf")

#hm:
hm = generateHeatmap(proc)
saveHeatmap(hm, file = "~/Downloads/0_hm.pdf")

from clustvis.

The code is now built into a proper R package, see title page of this repo for details.

from clustvis.