Comments (3)
Hi, I would suggest to first check whether /srv/shiny-server/ has the right content:
docker exec -ti customClustvisColor /bin/bash
cd /srv/shiny-server/
ls -l
If ClustVis code is not there then there is something wrong with mounting the volume. Maybe something has changed in the new Docker version?
BTW, I have never seen backslash in the Linux folder context like in \srv\shiny-server\
. Are you sure it was like this before, not /srv/shiny-server/
?
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Hi, I would suggest to first check whether /srv/shiny-server/ has the right content:
docker exec -ti customClustvisColor /bin/bash
cd /srv/shiny-server/
ls -l
If ClustVis code is not there then there is something wrong with mounting the volume. Maybe something has changed in the new Docker version?
BTW, I have never seen backslash in the Linux folder context like in
\srv\shiny-server\
. Are you sure it was like this before, not/srv/shiny-server/
?
Hi taunometsalu,
Thank you for the quick response.
I tried to check the content, it returns:
total 44
drwxr-xr-x 2 root root 4096 Oct 10 2017 01_hello
drwxr-xr-x 2 root root 4096 Oct 10 2017 02_text
drwxr-xr-x 2 root root 4096 Oct 10 2017 03_reactivity
drwxr-xr-x 2 root root 4096 Oct 10 2017 04_mpg
drwxr-xr-x 2 root root 4096 Oct 10 2017 05_sliders
drwxr-xr-x 2 root root 4096 Oct 10 2017 06_tabsets
drwxr-xr-x 2 root root 4096 Oct 10 2017 07_widgets
drwxr-xr-x 3 root root 4096 Oct 10 2017 08_html
drwxr-xr-x 2 root root 4096 Oct 10 2017 09_upload
drwxr-xr-x 2 root root 4096 Oct 10 2017 10_download
drwxr-xr-x 2 root root 4096 Oct 10 2017 11_timer
lrwxrwxrwx 1 root root 38 Oct 10 2017 index.html -> /opt/shiny-server/samples/welcome.html
lrwxrwxrwx 1 root root 37 Oct 10 2017 sample-apps -> /opt/shiny-server/samples/sample-apps
Then I tried to run container with "/", it worked out this time! And checking the content returns:
total 0
drwxrwxrwx 1 root root 40960 Jun 26 2019 datasets
drwxrwxrwx 1 root root 4096 Jun 26 2019 docker
-rwxr-xr-x 1 root root 31970 Jun 27 2019 global-copy.R
-rwxr-xr-x 1 root root 32139 Apr 7 00:06 global.R
-rwxr-xr-x 1 root root 1453 Jun 26 2019 README.md
drwxrwxrwx 1 root root 4096 Jun 26 2019 Rpackage
-rwxr-xr-x 1 root root 45251 Jun 26 2019 server-copy.R
-rwxr-xr-x 1 root root 46432 Jun 27 2019 server.R
-rwxr-xr-x 1 root root 67908 Jun 26 2019 ui - Copy.R
-rwxr-xr-x 1 root root 68203 Jun 27 2019 ui.R
drwxrwxrwx 1 root root 0 Jun 26 2019 www
I'm sure I used "" before and it worked well. Maybe the new update no longer accept that?
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Maybe, glad to hear that you got it working!
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Related Issues (17)
- Gene-based annotations HOT 1
- Separator/break HOT 5
- Disconnected from server HOT 4
- better examples when using straight from R HOT 2
- clustvis HOT 1
- problem with clustvis HOT 1
- Help with running from Docker image install HOT 3
- Getting PC variance percents HOT 1
- Provide missing annotation and pathway files HOT 1
- Application failed to start HOT 5
- Command line or api-like automation? HOT 3
- Cannot access http://biit.cs.ut.ee/clustvis/ HOT 4
- Need new function to pull out list of entries HOT 1
- http://biit.cs.ut.ee/clustvis/ not working HOT 4
- Too many open devices error HOT 1
- Disconnect from the server after uploading HOT 2
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