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pomodoror

A silly R package to help you write more

pyslim

Tools for dealing with tree sequences coming to and from SLiM.

random_seqmask

Input a fasta of sequence, masks each sequence randomly according to input parameters. Allows identical masking across the input sequences or random masking.

rdmc

R package implementing convergent adaptation models of Lee and Coop (2017)

relernn

Recombination Landscape Estimation using Recurrent Neural Networks

reproduce_it

shiny_popgen

Shiny apps for teaching Population Genetics

silastittes.github.io

slim

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

slim_bgs

Simple SLiM code to think about background selection and sweeps.

soapsearch

A simple method for searching through a suite of parameters for de novo assembly using soap denovo

stdpopsim

A library of standard population genetic models

styles

Official repository for Citation Style Language (CSL) citation styles.

sweep_regions

command line tool to define outliers and merge them into regions

tester

experimenting with more advanced git-tery

tidy-tour

Departmental Brown bag presentation on some tools from the tidyverse

tidy_vcf

Converts a sample of sites from standard VCF table into tidy format for easy summary stats and plotting.

tolerance_curves

Data, analyses, and code associated with "Grow where you thrive, or where only you can survive" (Tittes et al.)

tribolium_pipeline