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show_contacts

PyMOL Plugin for displaying polar contacts

shunsunsun.github.io

hello, this is my filed

simple-faster-rcnn-pytorch

A simplified implemention of Faster R-CNN that replicate performance from origin paper

simple_hmm

a simple hidden Markov model in python for tagging POS, segmentation and named entity recognition.

simupkgs

simu_pkg is program that i write in my spare time mainly focus on simulating some simple things such as XRD and molecular dynamics and so on if possible in the future.

single_cell_rna_seq_snakemake

singlecellcourse

sklearn-expertsys

Highly interpretable classifiers for scikit learn, producing easily understood decision rules instead of black box models

slidr

An R package for identification of synthetic lethal partners for mutations from large perturbation screens.

smac3

Sequential Model-based Algorithm Configuration

smallgenomeutilities

smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

smgr

SMGR: a joint statistical method for integrative analysis of single-cell multi-omics data

smiles-enumeration

SMILES enumeration for QSAR modelling using LSTM recurrent neural networks

smiles-gpt

Generative Pre-Training from Molecules

smiles-maskgan

smiles-rnn

Repository for SMILES-based RNNs for reinforcement learning-based de novo molecule generation

smiles-to-iupac-translator

NMT based SMILES to IUPAC Translator

smiles-transformer

Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda et al.

smiles_generator

Generative RNN for molecule de novo design

smiles_mol_dataset_in_dgl_styles

Transform the smiles list to DGLGraph data

smilesbasedsimilaritykernels

smilesvecproteinrepresentation

snap

Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.

snap-python

SNAP Python code, SWIG related files

sngan_projection

GANs with spectral normalization and projection discriminator

so-ontologies

Collect of SO Ontologies

solvationcalc

[WIP] A re-write of the solvation energy calculator ChemSol that uses the Langevin Dipole model.

som

Self organizing Kohonen map in Python with periodic boundary conditions

sonnet

TensorFlow-based neural network library

spark-avro

Avro Data Source for Apache Spark