Comments (1)
(used to be, "consider using scater::runPCA
/ scater::calculatePCA
", changed after discussion with Vince). irlba
has an advantage of only one dependency (Matrix
), and allowing computation of only the desired number of PCs. If you go the route of using irlba
, I would suggest using it all the time rather than only for larger matrices, for the sake of simplicity and not having to have two different sets of code.
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Related Issues (11)
- Command line for galaxy integration
- documentation on normalization are unclear HOT 1
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