shbrief Goto Github PK

1_mutect1_pon

Build a pool of normal (PoN) using MuTect v.1.1.7

1_mutect1_variants_calling

SNV/SNP calling using MuTect v.1.1.7

1_purecn_intervalfile

Build interval file for PureCN run from BED and mappability files

2019_scworkshop

Repo for Physalia course Analysis of Single Cell RNA-Seq data

2_purecn_coverage

CNVWorkflow for Terra - Step2 (calculate coverage)

3_purecn_normaldb

Build normalDB for CNV workflow using PureCN

4_purecn_purecn

5_purecn_dx

PureCN Dx.R for extracting copy number and mutation metrics

academic-kickstart

aim3

Dissertation Aim 3

anvil

Interact with AnVIL and Leonardo projects

anvil-docker

Docker containers for Anvil Project

anvil-portal

The front-facing AnVIL user portal

anvilworkflow

Runnable workflow package using Terra/GCP resources

anvilworkshop

AnVIL/Terra workshop for BioC2020

anvilworkshop_initial

AnVIL/Terra workshop for BioC2020

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

awesome-drug-discovery-knowledge-graphs

A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)

awesome-transfer-learning

Best transfer learning and domain adaptation resources (papers, tutorials, datasets, etc.)

biobaker

Running bioBakery workflow in Terra

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

biobombe

BioBombe: Sequentially compressed gene expression features enhances biological signatures

bioc-intro

Bioconductor data science introduction

bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

biochatter

Backend library for conversational AI in biomedicine

biocmeetup

bioconcotk

Bioconductor components for general cancer genomics

bioconductor-workshop-r

R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.

bioconductor_devel

Docker container built on bioconductor/devel_base2

biocpkgtools

Computable build reports, package metadata, and download stats from the Bioconductor project