• Let's abandon the idea of making files inaccessible to the user and instead set correct group permissions directly. Otherwise, we are seeing issues where the group doesn't get execute permissions on folders when Uppmax script modifies the permissions
• Also, we should follow the uppnex_datadeliver example of creating the full folder structure before syncing files

The snic_util script should be moved to the taca ngi pipeline.

... which is why e.g. the plots subdirectory is missing

When a sample on seqrun level has failed that data (fastq files) should not be delivered (as default setting).
We need to decide how to fail a sample on seqrun level. As it is today you can fail QC on libprep level, but if there are two seqruns under same libprep how do we then fail just one. On seqrun level we have alignment_status that can be marked as failed, but that is more connected to ngi_pipeline/piper (I guess).