richardmleggett / marti Goto Github PK
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License: MIT License
Metagenomic Analysis in Real Time
License: MIT License
Hi,
I really like your app and I was trying to test it using the container with singularity. I ran into the issue that I cannot load the files to start an analysis or load an output. I am getting this error when running the container :
I also added the path of the output inside the marti_engine_options.txt as well as MARTiSampleDirectory but i am also getting this message: MARTiSampleDirectory not specified.
Warning: Ignoring extra certs from `/etc/pki/ca-trust/extracted/pem/tls-ca-bundle.pem`, load failed: error:02001002:system library:fopen:No such file or directory
No or invalid entry for port. Set to default (3000)
Could it be the cause of my problem,
best,
Loïc
Hi all
I recently set up MARTi (v0.9.16c) on a new system. When using the -writeconfig option to generate a new config file, using the updated marti_engine_options.txt from bin, I received the following error:
ERROR: Unknown token in marti_engine_options Kraken2Process
Token is being ignored
ERROR: Unknown token in marti_engine_options Name
Token is being ignored
ERROR: Unknown token in marti_engine_options Database
Token is being ignored
ERROR: Unknown token in marti_engine_options Kraken2Threads
Token is being ignored
ERROR: Unknown token in marti_engine_options UseToClassify
Token is being ignored
Error: missing Centrifuge name.
I'm happy to look at it myself, as I assume it's only a minor error, but can't yet tell when I'll find time to do so.
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