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rna_seq_pipeline

Bulk RNA-seq analysis sample pipeline

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

samplesizereport

Report systems for sample-size estimations

sc2meta

Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data"

simutb

Simulation Toolbox

stamps-tutorial

stats_knowledge

Personal gitbook for information on statistical models

taxasetsutils

R package providing utilities for working with taxonomic sets for microbiome data

tfltargets

WIP: Factories for generating TFLs using {targets} and a titlefootnote file.

thesis

Mah thesis

tidycompositional

Compositional data analysis procedures translated to the {tidymodels} ecosystem.

tidystepwise

Performing stepwise regression using the {tidymodels} framework.

traitsigdbr

Trait-based signatures for microbiome relative abundance data

upswing_downswing

Analysis repo for upswing/downswing analysis of COVID forecasters

variant_estimation

Estimating prevalence of the new COVID-19 variant using hierarchical bayes

video_game_length

Analyzing the relationship between time-to-beat, ratings, and sales across time

visr

A package to wrap functionality for plots, tables and diagrams adhering to graphical principles.