Quang Nguyen's Projects
R scripts for Analysis of Composition of Microbiomes (ANCOM).
Analyses for a project assessing functional redundancy w/ antibiotic exposures in infants
Code from previous projects that are not actively used
The most cited deep learning papers
Deep Learning and deep reinforcement learning research papers and some codes
A curated list of Rust code and resources.
:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!
Official git repository for Biopython (converted from CVS)
Budget app using R Shiny and sqlite
R package for performing enrichment analysis for microbiome relative abundance data using the CBEA approach.
Reproducible analyses for manuscript "CBEA: Competitive Balances for Taxonomic Enrichment Analysis"
WIP: Dose escalation exploration
Manuscript repo for cILR: Competitive Isometric Log Ratio
build and test recipes for conda
Comparing death data across different sources
Directed Acyclic R Script Networks
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
Predicting election outcomes using Elo rankings from polling results
Ensemble Feature Scoring Method for Microbiome relative abundance data
Tools for basic signal processing in epidemiology.
Extension to SparseDOSSA2 simulation approach. Provides more complex scenarios and conversions.
Experimental package to perform explicit versioning of specific R scripts and markdown files.
Tutorial for using gatk to do somatic variant calling on normal samples.
Gene set analysis methods in Julia
A collection of useful .gitignore templates
Geo-temporal Data Frames and Tools
Solutions and notes for "In all likelihood" by Yudi Pawitan
Reproducible analyses for the paper "Associations between the gut microbiome and the metabolome in early life"