Git Product home page Git Product logo

My work focuses on single-cell, bioimage and spatial data analysis to understand immune-tumor interactions in various cancer types. I also build R/Bioconductor packages and workflows to standardize bioimage and spatial data analysis. You can see my main contributions on the BodenmillerGroup organisation.

GitHub statistics

Github stats

Ex-Package maintainer

Package Rank Build
cytomapper
imcRtools

Package contributor

Package Rank Build
cytoviewer
BASiCS
imcdatasets

Ex-Workflow maintainer

Workflow Build Website
IMCWorkflow https://bodenmillergroup.github.io/IMCWorkflow/
IMCDataAnalysis build https://github.com/BodenmillerGroup/IMCDataAnalysis

Analysis repositories

Repository Year
cytomapper_publication 2020
GammaDeltaTcells2018 2018
Spermatogenesis2018 2018
RegressionBASiCS2017 2017
ImmuneAging2017 2017
Platynereis2017 2017

Nils Eling's Projects

basics icon basics

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

bioc_image_tests icon bioc_image_tests

Random scripts to test handling of bioimage file formats as part of Bioconductor.

biocstickers icon biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

btm icon btm

Teaching material for BTM 2016

multiplexedimageanalysis2022 icon multiplexedimageanalysis2022

This repository hosts the scripts to reproduce the analysis presented in the practical session of "Tumors and the immune system 2022 - High dimensional spatial profiling of tumor microenvironment"

neighbourhood icon neighbourhood

Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.

thesis icon thesis

Latex scripts to compile my PhD thesis

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.