Comments (2)
nschan
commented on August 21, 2024
Actually, this turned out to be a problem with my samplesheet, sorry.
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nschan
commented on August 21, 2024
I would like to reopen the issue, since I do not think it is an issue with my samplesheet.
Rather, it seems like #nf-core/nanoseq/blob/master/subworkflows/local/align_minimap2.nf#L21 does cross genome and fastq channels, but as far as I understand PREPARE_GENOME does not return the sample name / meta in the ch_fastq #nf-core/nanoseq/blob/master/subworkflows/local/prepare_genome.nf#L29
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Related Issues (20)
- Incorrect usage example at the Documentation section HOT 1
- To include profile "test" directRNA programs
- Nanopolish does not include the required HDF5 plugin and/or VBZ decompression HOT 7
- Nanoplot output files clobber each other .. HOT 4
- MultiQC report not triggered by FastQC input
- No profile for Apptainer (Singularity successor)
- Parallelize nanopolish eventalign
- Update m6anet to version 2
- JAFFAL pipeline crashes when singularity is used HOT 5
- JAFFA error using docker in nf-core/nanoseq version 3.0.0 and 3.1.0 HOT 8
- Add `dorado` as the basecaller HOT 2
- Process `NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (23046_LEC_R1)` terminated with an error exit status (2) HOT 5
- modular version of the DNA protocol
- Issue with installing/test run HOT 2
- Pulling biocontainers:v1.2.0_cv1 Singularity image fails HOT 3
- pipeline terminating early HOT 2
- Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt
- SNIFFLES_SORT_VCF return an error due to mkdtemp
- ERROR ~ Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (sequences_inputNB.csv)'
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