Comments (4)
Actually, NanoComp https://github.com/wdecoster/nanocomp might be the better option here.
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Following up on this as I have the same issue.
Do we have a newer version of the pipeline that prefixes sample names to Nanoplot outputs or uses Nanocomp?
Version: nf-core/nanoseq v3.1.0 (seems to match with the latest version on github)
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Hi,
Hope you are doing well!
Wanted to reach out and check if this bug has been fixed in the current version or when we can expect an update.
Much Thanks!
Swathi
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Related Issues (20)
- Module compilation error HOT 1
- Incorrect usage example at the Documentation section HOT 1
- To include profile "test" directRNA programs
- Nanopolish does not include the required HDF5 plugin and/or VBZ decompression HOT 7
- MultiQC report not triggered by FastQC input
- No profile for Apptainer (Singularity successor)
- Parallelize nanopolish eventalign
- Update m6anet to version 2
- JAFFAL pipeline crashes when singularity is used HOT 5
- JAFFA error using docker in nf-core/nanoseq version 3.0.0 and 3.1.0 HOT 8
- Add `dorado` as the basecaller HOT 2
- Process `NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (23046_LEC_R1)` terminated with an error exit status (2) HOT 5
- modular version of the DNA protocol
- Issue with installing/test run HOT 2
- Pairing between sample and genome is ignored for demultiplexed reads (cDNA mode) HOT 2
- Pulling biocontainers:v1.2.0_cv1 Singularity image fails HOT 3
- pipeline terminating early HOT 2
- Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt
- SNIFFLES_SORT_VCF return an error due to mkdtemp
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