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Niklas Schandry's Projects

aradeepopsis-1 icon aradeepopsis-1

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

gggenomes icon gggenomes

A grammar of graphics for comparative genomics

hrp icon hrp

The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome assemblies.

models icon models

Models and examples built with TensorFlow

nanoseq icon nanoseq

Nanopore demultiplexing, QC and alignment pipeline

nextflow icon nextflow

A DSL for data-driven computational pipelines

nschan icon nschan

Config files for my GitHub profile.

pca_visual icon pca_visual

This repository contains a visual approach to Principal Component Analysis of more than three vectors

slr icon slr

Scaffolding using long reads obtained by the third generation sequencing technologies.

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