PCA plotting app
Created March 2017 by Ruth Topless with help from Murray Cadzow
either clone the repo or download and extract the zip archive for the repo
Use the finalPCAclusterapp.R with the PCAtestdata.txt
Install the required libraries
if(!require("shiny")){
install.packages("shiny")
}
if(!require("shinythemes")){
install.packages("shinythemes")
}
if(!require("utils")){
install.packages("utils")
}
if(!require("dplyr")){
install.packages("dplyr")
}
if(!require("ggplot2")){
install.packages("ggplot2")
}
if(!require("ggrepel")){
install.packages("ggrepel")
}
The lab data can be found on the server here (path to server data)
To run the app with the lab data change this line (line ~16) in finalPCAclusterapp.R
PCAtestdata <- read.delim("PCAtestdata.txt", stringsAsFactors = F)
to
PCAtestdata <- read.delim("/path/to/server/data/", stringsAsFactors = F)
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