mrinalmanu Goto Github PK

2019-snakemake-harvard-informatics-nanocourse

Intro to workflows for efficient automated data analysis, using snakemake.

ace

Seminar materials for BCBB ACE Workshops

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bible_corpus_tools_in_python

bmi565

burchardlab_tutorials

chipseq_and_peak_calling_pipelines

This is 3 day module of Epigenomics from Bioinformatics Institute for students of Systems Biology and Bioinformatics.

class_assignments

Semester 1 assignments

code_files_bioinfo

Backup for analyses code files scRNAseq, GWAS, metagenomics etc

exporatorygenomes

Exploratory and visual analytical tools for plant genomes.

gatk4_exome_scripts

gatk4 variant analysis in snakemake

glossika-anki-decks

Create Anki decks from Glossika PDFs (Taiwanese Mandarin / 國語) 🇹🇼

gwaspipeline

A basic GWAS analyses workflow. Worked examples provided in rendered markdown.

hanzi_3000_anki

Anki deck with 3182 traditional characters, annotated with examples, sounds, images.

learning_bam_file

Learning the Sequence Alignment/Map format

learning_vcf_file

Learning the Variant Call Format

metagenome_assembly_pipeline

A pipeline to go from raw sequencing data to high quality bins and pretty plots.

metagenomics_2019

It will contain 2 parts. The first one leads upto Introduction to Statistical hypotheses and modelling. The most intresting bit here is 'Compositional analysis'.

mtdna-cnv

Trainee project at IGIB

neurosummerschools

List of summer schools in neuroscience and related fields

ngs_pipeline

osgenome

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

pcaplotting

PCA plotting app

personal

Personal repository of cool stuff

phylogenetics_2019

Phylogenetics module, 3rd sem, ITMO

population_genetics_2019

Population genetics module homeworks.

proteomics_2019

This repository will contain my results from tutorials taught in proteomics module 2019 at ITMO MS Bioinformatics and Systems Biology course.

pubmed_result_analysis

Analyses of pubmed search results in R and Python. WORK IN PROGRESS.

py_zero

Python basic to intermediate. Course @ TSU