See https://github.com/monarch-initiative/ontotools-docker instead.
This repository contains the configuration of a bespoke Ontology Lookup Service for the Monarch Initiative.
make docker-build
make docker-run
OLS should now be running at http://localhost:8080
An overview of the process can be found here
There are 2 relevant Jenkins jobs:
- build-monarch-ols is responsible for preprocessing the ontologies, building the OLS docker image and publishing it to dockerhub.
- deploy-ols-m2 is responsible for pulling the latest monarch ols image from [dockerhub](docker pull monarchinitiative/monarch-ols) and deploying it on monarch2.
As an aside:
- hpo-pipeline-dev2 is responsible for generating the HPO daily snapshot.
- Add ontology metadata to ols/ols-config.yaml
- Add ontology id to Makefile