Monarch Initiative's Projects
Notebooks and analyses for the 2020 NAR submission
Scripts to analyze monarch data sets and scigraph
Annotation Sufficienct Tool
A format for language profiles for ontologies
API for linked biological knowledge
Pydantic dataclasses for the Biolink model
Research Prototype for BioWeave Language and Tools
For testing and debugging purposes of boomer
Single source of truth for Monarch Initiative brand assets and resources (e.g. logos
Tooling for merging individual source KGX files in the Monarch ingest pipeline
Add closure expansion fields to kgx files following the Golr pattern
LLM-driven curation assist tool (pre-alpha)
Deprecated, see README
Repository for the coordination of design patterns across ontologies
Data Ingestion Pipeline for Monarch
Prefetch tens of gigs of files & provide more robust update info downstream
mining and merging disease resources
Disease set phenotypic profile comparison
🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
Identifier equivalency service
Repo for generating monarch data dependencies like the one used by exomiser
Fanconi Anemia INCAForm site
Phenomenal text mining for disease and phenotype concepts
Graphical User Interface for Fenominal
Python convenience wrappers for Phenopacket Schema