Monarch Initiative's Projects
stub for monarch phenote
A Cookiecutter to kickstart Python based projects.
Monarch Python API
WORK IN PROGRESS - new effort at implementing a QC Dashboard for the Monarch KG and Ingest
Project to create QC Reports for the Monarch Knowledge Graph.
Repository to manage monarch specific ROBOT extensions
Monarch Semantic Similarity
Solr Indexing for the new Monarch graph
Specification for building monarch with docker-compose
NCATS Translator ARA TRAPI wrapper for the Monarch Initiative system
The previous version of the Monarch Initiative website
DO NOT USE
This is a repository to coordinate the metadata and dissemination of all Monarch-produced data sources across teams and organisations.
R package for easy access, manipulation, and analysis of Monarch KG data
Mondo Disease Ontology
Coordinating the mondo-ingest with external sources
Repo to coordinate the work on Mondo papers
Mondo translator subset which removes certain classes from the official Mondo release.
Python library for mondo QC
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
Demonstration of bias in graph machine learning owing to negative example selection
First pass at a thin wrapper around the Monarch API and ChatGPT plugin
Alpha test for a Monarch-backed plugin for ChatGPT.
Evaluations for the Monarch OpenAI Plugin/Monarch Assistant against benchmarks.
A dockerised version of the OLS for Monarch Ontologies
Source files for axiomatizing the ontology of OMIA