This repository hosts codes and analytic procedures for the article "Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models" by Mollinari and Garcia
Just trying to run MAPpoly and I'm stuck at the step in the potato Vignette (using my own test dataset) est_pairwise_rf. I get the following error message:
INFO: Using 7 CPUs for calculation.
Error in checkForRemoteErrors(val) :
7 nodes produced errors; first error: "pairwise_rf_estimation" not available for .Call() for package "mappoly"
I had a look around in mappoly:: and mappoly::: and couldn't see the function. The steps up to then worked fine. My test data is nothing strange I think. Was wondering whether the previous step cache_counts_twopt assumed I was using the Vignette data (although the object seq.unique was created using my own data).