mmollina Goto Github PK

acspb

Advancing Computing Skills in Plant Breeding - Linkage and QTL mapping in diploid and polyploid species - Lorizzo & Mollinari

aghmatrix

An R package to compute relationship matrices for diploid and autotetraploid species

alfalfa_mid_density_genotyping_platform

This repository hosts codes and analytic procedures for the article "A public mid-density genotyping platform for Alfalfa (Medicago sativa L.): A fast and robust genotyping platform for alfalfa breeding." by Zhao et al., (2023))

autopolyploid_linkage

This repository hosts codes and analytic procedures for the article "Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models" by Mollinari and Garcia

b2721_map

This repository hosts codes and analytic procedures for the article "The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population" by Pereira et al. (2020)

biometria-de-marcadores

Página da disciplina LGN 5830, Biometria de Marcadores Genéticos (Departamento de Genética, ESALQ/USP)

cache_count

RData files containing the frequency of genotypes for the two-point analysis.

clustercall

ClusterCall is an R package for making tetraploid genotype calls from SNP array data. This repository was created to facilitate the instalation of ClusterCall. This package was developed by Jeff Endelman Group and if you use the software, please cite [https://doi.org/10.1007/s00122-016-2845-5]

cpp_and_r

This repository contains an elementary introduction about C++ and R integration using. Rcpp

d3heatmap

A D3.js-based heatmap htmlwidget for R

data

diaqtl

QTL analysis in diallel populations

ggsci

Scientific journal and sci-fi themed color palettes for ggplot2

highprechmm

Extension of HMM procedure presented in Mollinari and Garcia to re-estimate maps in multi-parental polyploid populations

ldsep

Linkage Disequilibrium Shrinkage Estimation for Polyploids

mappoly

Genetic maps in autopolyploids

mappoly-mp

Research codes for new mappoly version

mappoly2

Genetic Linkage Maps in Autopolyploids v 2.0

mappoly2_vignettes

Vignettes for MAPpoly2

mappoly_vignettes

Repository of MAPpoly vignettes

markdown-template

A markdown template for any project, resume, github repo or whatever

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

mm_info

onemap

Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses

polybreedr

Using genome-wide markers for polyploid breeding

r-presentation-template

rabbit

A Mathematica pipeline for genetic analysis in multiparental populations

rfpack

Repository created to host a simple package example.

sandbox

Testing environment for untested code and outright experimentation.

scri

Training material for MAPpoly