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galaxy

Data intensive science for everyone.

gbrowse

the Generic Genome Browser

gcta

Source for a project some user wanted to see added to MacPorts. With included Eigen headers.

gear

GEnetic Analysis Repository

gemini

a lightweight db framework for exploring genetic variation.

gene_lists

List of gene lists for genomic analyses.

genomic-prediction

A repository for Genomic Prediction scripts

genomics-tools-and-tutorials

genomicspapers

The Leek group guide to genomics papers

genstats

Statistics course for JHU Genomic Data Science Sequence

gerpplusplus

GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.

ggbiplot

A biplot based on ggplot2

glove

GloVe model for distributed word representation

gms

The Genome Modeling System installer

gqt

A genotype query interface.

grpregoverlap

Regularization paths of linear, logistic, Poisson, or Cox models with overlapping grouped covariates

gs3

GS3, software for genomic prediction and whole genome Bayesian analysis

gwas

Scripts for GWAS association and metaanalysis

gwas-pw-paper

gwas_benchmark

A set of tools for benchmarking or evaluating GWAS algorithms. A detailed description can be found in C. Widmer et al., Scientific Reports 2014.

h2o-tutorials

Tutorials and training material for the H2O Machine Learning Platform

hapbin

Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

hgi-cookie-monster

CookieMonster setup for HGI

hipsternet

All the hipster things in Neural Net in a single repo

hotspot3d

3D hotspot mutation proximity analysis tool

htslib

C library for high-throughput sequencing data formats

impute-deletion

Pipeline for imputing large chromosomal deletions

intro-to-dl

Resources for "Introduction to Deep Learning" course.

introdeeplearning

introtodeeplearning_labs

Lab Materials for MIT 6.S191: Introduction to Deep Learning