Git Product home page Git Product logo

Comments (6)

MikkelSchubert avatar MikkelSchubert commented on July 29, 2024

It's definitely not supposed to take that long.
I'll look into it before the end of the week and get back to you.

Best,
Mikkel

from paleomix.

renhamm avatar renhamm commented on July 29, 2024

Thanks!
I was able to get it to run once I specified versions for all the channels/dependencies, but that resulted in ~100 conflicts across packages. Currently trying different combinations to see if I can resolve this issue

from paleomix.

MikkelSchubert avatar MikkelSchubert commented on July 29, 2024

Have you tried using mamba instead of vanilla conda?
If not, then I'd highly recommend it. Mamba only takes a few seconds resolve the environment on my system.

I think the problem is that I've consistently been using mamba for a long time, so I didn't notice how bad it had gotten with regular conda. I'll try to see if I cannot improve the situation without having to specify exact versions for everything, but that might end up being the solution.

from paleomix.

MikkelSchubert avatar MikkelSchubert commented on July 29, 2024

I've attached an alternative conda environment to this message, which should solve the problem by pinning the major and minor versions, but not the point release (${major}.${minor}.${point}). It still takes about 4-5 minutes to resolve with conda on my machine, compared to about 2-3 seconds with mamba, which is not optimal, but it's usable. I could reduce it further by pinning the point releases, but that would result in people missing out on bug-fixes in dependencies in between the (very irregular) paleomix releases.

If mamba isn't an option, or if you have time to test it anyway, then please let me know if it works for you.

paleomix_1_3_8.yaml.txt

from paleomix.

renhamm avatar renhamm commented on July 29, 2024

I was able to get things up and running with mamba!

from paleomix.

renhamm avatar renhamm commented on July 29, 2024

from paleomix.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.