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adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

big_text

Locate text or uncompressed files.

bioprofile400_logger

Connect to Bioprofile400 and log the data to file

crispy

CRISPyR, Cas9 target scoring program

dammet

disk_usage

Simple command to print disk usage stratified by user

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

mapdamage

mapDamage: tracking and quantifying damage patterns in ancient DNA sequences

noodles

Bioinformatics I/O libraries in Rust

paleomix

Pipelines and tools for the processing of ancient and modern HTS data.

retable

Pretty printing of tabular data

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

sickle

Windowed Adaptive Trimming for fastq files using quality

snakemake-lang-vscode-plugin

Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

tmon

typed-argparse

💡 write type-safe and elegant CLIs with a clear separation of concerns.

wf-human-variation

zonkey

Reference panels for the Zonkey pipeline (paleomix)