Related Issues (20)
- paleomix bam_pipeline: error: unrecognized arguments: --gatk_max_threads=1 --progress_ui=running --jre_options= HOT 5
- ImportError: libhts.so.2: cannot open shared object file: No such file or directory HOT 14
- checkpointing HOT 2
- About the MinQuality setting HOT 6
- BOWTIE2 errors in the pipeline HOT 8
- A problem of PALEOMIX 2.0.0-alpha documentation HOT 2
- Should the .rmdup.collapsed.bam and .rmdup.normal.bam be merged? HOT 1
- biobambam2 instead of picard-tools? HOT 10
- Paleomix can not find picard even though it is there HOT 8
- Issue When Employing `RegionsOfInterest`. HOT 6
- similar bams with rescale and non rescale HOT 2
- Phylo pipeline "unknown command" HOT 2
- BWA backtrack additional options added to samse, not aln HOT 3
- conda environment perpetually solving during installation HOT 6
- Errors running node HOT 2
- Error with trimming SE adapters from sample HOT 2
- Receieved a NodeError while running the pipeline HOT 1
- BWA terminated by SIGKILL, PALEOMIX in BAM pipline HOT 2
- Duplicated reads error HOT 3
- Paleomix output reads folder no fastq reads HOT 2
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