Comments (3)
Hi @larouchej
As we are rewriting SPOTlight we decided to rename the function spotlight_deconvolution
to SPOTlight
. This is just a change of the name since the underlying code shouldn't change the ouput. Can you try calling SPOTlight as: SPOTlight::SPOTlight(...)
from spotlight.
That works. Sorry I missed the change--is it included in an updated vignette, or not yet? Thank you!
from spotlight.
No problem! You can find the updated vignette Rmd file here.
Apologies for the inconvenience and let me know if you have any further questions!
from spotlight.
Related Issues (20)
- Issues using plotSpatialScatterpie() with Seurat HOT 2
- Assay Parameter not working in SPOTlight function HOT 2
- Error: Couldn't extract image coordinates HOT 2
- error when using trainNMF function HOT 3
- Seurat Object Issues
- Issue plotSpatialScatterpie with a seurat object HOT 2
- Questions about the workflow of SPOTlight HOT 5
- Question about SPOTlight_deconvolution_analysis HOT 1
- Question about accessing older versions of SPOTlight HOT 4
- problem with plotTopicProfiles: Error in plotTopicProfiles(x = mod, y = sce$Cell_Type, facet = FALSE, : is(x, "NMFfit") is not TRUE HOT 3
- deconvolution with the same reference HOT 7
- Issue plotSpatialScatterpie with a SpatialExperiment object HOT 3
- Deconvolution cannot identify tumor cell type in tumor spatial data HOT 2
- Suspected incorrect variable names used in vignette HOT 1
- Problem on spotlight_deconvolution(old version) HOT 1
- SPOTlight function crashes R studio session HOT 4
- Convert mgs to data.frame HOT 1
- export SPOTlight results to 10x Genomics Loupe Browser HOT 3
- colData(sc_data)$subclass HOT 1
- Difference between cell type correlation and cell communication HOT 1
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