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MarcElosua avatar MarcElosua commented on June 30, 2024

Hi @Loudon85 ,
I've tried to replicate your issue but in my machine I can replicate the plot with the labels.
image

Here is my session info specifying the packages and their versions, could you check if we have the same version of igaph?

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] RColorBrewer_1.1-2        SPOTlight_0.1.7           gt_0.3.0                  pbmcsca.SeuratData_3.0.0 
 [5] SeuratData_0.2.1          data.table_1.14.0         Matrix_1.3-3              igraph_1.2.6             
 [9] dplyr_1.0.6               SeuratObject_4.0.1        Seurat_4.0.2              stxBrain.SeuratData_0.1.1

loaded via a namespace (and not attached):
  [1] Rtsne_0.15            colorspace_2.0-1      deldir_0.2-10         ellipsis_0.3.2        ggridges_0.5.3       
  [6] rprojroot_2.0.2       rstudioapi_0.13       spatstat.data_2.1-0   leiden_0.3.8          listenv_0.8.0        
 [11] farver_2.1.0          ggrepel_0.9.1         fansi_0.4.2           scatterpie_0.1.6      codetools_0.2-18     
 [16] splines_4.0.4         polyclip_1.10-0       jsonlite_1.7.2        ica_1.0-2             cluster_2.1.0        
 [21] png_0.1-7             uwot_0.1.10           ggforce_0.3.3         shiny_1.6.0           sctransform_0.3.2    
 [26] spatstat.sparse_2.0-0 BiocManager_1.30.15   compiler_4.0.4        httr_1.4.2            rvcheck_0.1.8        
 [31] assertthat_0.2.1      fastmap_1.1.0         lazyeval_0.2.2        cli_2.5.0             later_1.2.0          
 [36] tweenr_1.0.2          htmltools_0.5.1.1     tools_4.0.4           gmp_0.6-2             gtable_0.3.0         
 [41] glue_1.4.2            RANN_2.6.1            reshape2_1.4.4        rappdirs_0.3.3        Rcpp_1.0.6           
 [46] scattermore_0.7       vctrs_0.3.8           arrangements_1.1.9    nlme_3.1-152          lmtest_0.9-38        
 [51] stringr_1.4.0         globals_0.14.0        mime_0.10             miniUI_0.1.1.1        lifecycle_1.0.0      
 [56] irlba_2.3.3           goftest_1.2-2         future_1.21.0         MASS_7.3-53           zoo_1.8-9            
 [61] scales_1.1.1          spatstat.core_2.1-2   promises_1.2.0.1      spatstat.utils_2.1-0  parallel_4.0.4       
 [66] reticulate_1.20       pbapply_1.4-3         gridExtra_2.3         ggplot2_3.3.3         rpart_4.1-15         
 [71] stringi_1.6.2         rlang_0.4.11          pkgconfig_2.0.3       matrixStats_0.58.0    lattice_0.20-41      
 [76] ROCR_1.0-11           purrr_0.3.4           tensor_1.5            patchwork_1.1.1       htmlwidgets_1.5.3    
 [81] cowplot_1.1.1         tidyselect_1.1.1      here_1.0.1            parallelly_1.25.0     RcppAnnoy_0.0.18     
 [86] plyr_1.8.6            magrittr_2.0.1        R6_2.5.0              generics_0.1.0        nnls_1.4             
 [91] DBI_1.1.1             mgcv_1.8-33           pillar_1.6.1          fitdistrplus_1.1-3    survival_3.2-7       
 [96] abind_1.4-5           tibble_3.1.2          future.apply_1.7.0    crayon_1.4.1          KernSmooth_2.23-18   
[101] utf8_1.2.1            spatstat.geom_2.1-0   plotly_4.9.3          jpeg_0.1-8.1          grid_4.0.4           
[106] digest_0.6.27         xtable_1.8-4          tidyr_1.1.3           httpuv_1.6.1          munsell_0.5.0        
[111] viridisLite_0.4.0    

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