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contact-mode-score

contactplot

dr_sasa plot script

cookiecutter-cms

Python-centric Cookiecutter for Molecular Computational Chemistry Packages

coordgenlibs

Schrodinger-developed 2D Coordinate Generation

copernicus

Copernicus

cov2db

cov2db repo provides necessary scripts for building a database of low frequency variants

cppmol

A macromolecule visualization tool written in C++ and OpenGL

cpptraj

Biomolecular simulation trajectory/data analysis.

cross-symbol-checker

Cross check RefSeq and Ensembl annotation sources for HGNC Symbols

csv-merge

GUI tool to merge CSV files

cvitjs

CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.

data-curator

Data Curator - share usable open data

database_papers

a repo to share papers on useful databases

datasette

An open source multi-tool for exploring and publishing data

datatables

Tables plug-in for jQuery

datawarrior

Interactive data analysis and visualisation with chemical intelligence

dbgate

Database manager for MySQL, PostgreSQL, SQL Server, MongoDB, SQLite and others. Runs under Windows, Linux, Mac or as web application

deconz-rest-plugin

deCONZ REST-API plugin to control ZigBee devices

deep_scaffold

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepmd-kit

A deep learning package for many-body potential energy representation and molecular dynamics

deeptime

Deep learning meets molecular dynamics.

dejavu

The Missing Web UI for Elasticsearch: Import, browse and edit data with rich filters and query views, create search UIs visually.

delinker

demo

Make a Django Front-End for Your SQL Server Database

descriptastorus

Descriptor computation(chemistry) and (optional) storage for machine learning

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

diffdock-pp

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

diffsbdd

A Euclidean diffusion model for structure-based drug design.