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m-hakmi's Projects

smoldock icon smoldock

A protein-ligand docking software ! Modern C++, extensibility, and more ! [Note: not maintained anymore, dubiously functional, caveat emptor]

speciflex icon speciflex

A tool to generate contour for volumes sampled via MD trajectories as well as computing difference-volumes from two trajectory volumes

sqlchat icon sqlchat

Chat-based SQL Client and Editor for the next decade

srfrs icon srfrs

Windows Programming software for the SA818 SR110 SR-FRS radio module.

streamd icon streamd

Automate MD associated calculations

svdb icon svdb

structural variant database software

tafrigh icon tafrigh

تفريغ المواد المرئية أو المسموعة إلى نصوص

teachopencadd icon teachopencadd

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

text-generation-webui icon text-generation-webui

A gradio web UI for running Large Language Models like LLaMA, llama.cpp, GPT-J, Pythia, OPT, and GALACTICA.

tf3p icon tf3p

Three-dimensional force fields fingerprints

tftraj icon tftraj

Molecular dynamics trajectory analysis in Tensorflow

torchmd icon torchmd

End-To-End Molecular Dynamics (MD) Engine using PyTorch

traitar icon traitar

From genomes to phenotypes: Traitar, the microbial trait analyzer

ttclust icon ttclust

clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)

vatools icon vatools

A set of tools to annotate VCF files with expression and readcount data

vcf-annotator icon vcf-annotator

Add biological annotations to variants in a given VCF file.

vcf.filter icon vcf.filter

Graphically filter VCF files on custom annotations. Java 1.8 application. Filter and prioritize genomic sequence variants reported in VCF files.

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