Comments (1)
LuyiTian
commented on July 18, 2024
yes, sce4_qc contains the CEL-seq2 single-cell data.
the reason for double qc is that Drop-seq contains empty droplets with ambient RNA so we remove these background barcode again after initial QC.
We are clean up the data and script right now, sorry for the confusion.
There will be more single-cell data, with more cell lines and other protocols as well.
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Related Issues (15)
- All the methods tested in the paper all limited in R language? HOT 1
- How to perform log transformation？ HOT 3
- some question about clustering HOT 5
- Question regarding 10x UMIs HOT 1
- Is the 10X data 3' or 5'? Which chemistry was used? HOT 1
- can't reproduce the results in the paper HOT 1
- Plans to make into ExperimentHub package? HOT 3
- Number of cells discrepancy HOT 1
- five cancer cell line 10x data barcode+UMI length
- mitochondrial RNA
- A query about theoretical total input of spike-ins HOT 2
- known cell grouping variable HOT 2
- Fix encoding(?) of the *_call.R scripts in script/clustering/Clustering_Algorithms HOT 1
- Loading the data from Python HOT 2
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