Comments (3)
+1, I want to re-up this issue as I think this would be a highly useful way for the broader community to use/access this data. It would only require relatively modest refactoring of the current code to be in a package format, and would conversely have an outsize effect on its visibility.
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Hi, just wanted to follow-up here on this issue - I would like to feature CellBench_data in some workflows that I plan to publish, and it would be great to be able to access the data programmatically through an ExperimentHub based package similar to TENxPBMCData or TENxBrainData. Are there any updates on your end regarding this (either affirmative or negative?)
from sc_mixology.
glad to hear the data is useful. I do have the plan to make an ExperimentHub package but not recently. The current dataset won't move or change so you can safely use the link. We are busy doing the experiment to add more data, using recent protocols such as ATAC-seq and cell hashing.
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Related Issues (15)
- All the methods tested in the paper all limited in R language? HOT 1
- How to perform log transformation? HOT 3
- some question about clustering HOT 5
- Question regarding 10x UMIs HOT 1
- Is the 10X data 3' or 5'? Which chemistry was used? HOT 1
- can't reproduce the results in the paper HOT 1
- Number of cells discrepancy HOT 1
- five cancer cell line 10x data barcode+UMI length
- mitochondrial RNA
- A query about theoretical total input of spike-ins HOT 2
- known cell grouping variable HOT 2
- Fix encoding(?) of the *_call.R scripts in script/clustering/Clustering_Algorithms HOT 1
- Rdata file contains variables with unclear names HOT 1
- Loading the data from Python HOT 2
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