Comments (3)
Hi, sorry for the confusion, maybe I need to rewrite the message later.
basically, by giving --requiring_taxa Arthropoda
, it will discard the non-Arthropoda sequences, the non-Arthropoda sequences are considered as contaminations.
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Thank you for the clarification.
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Related Issues (20)
- Vertebrate mitogenome comes out 10k bp, linear, and unannotated HOT 3
- Annotating shorter than 600 bp control region HOT 6
- 你好,我在使用mitoz时遇到了一些问题。我正在使用的脚本是“mitoz all -- outfix text -- fq1 text -- fq2 text -- data_size_for_mt_assembly 3,0-- assembler megahit -- requiring _taxa”。同一脚本有两对样本,一组成功运行了结果,另一对报告了错误。显示的代码是运行创世纪外壳文件运行基因将结果转换为gff3格式Cat:'/ Csd5057. megait. hmmtblout. besthit. sim. fa. genewise/*/*. genewise ': 不存在那个文件或目录 抱歉,注释没有结果!请问原因是什么 HOT 3
- Issue with tRNA annotation HOT 2
- Error in subcommand annoate in the Singularity image MitoZv3.4. HOT 2
- Problem with annotation HOT 1
- 在select_sequences_by_gene_completeness函数中,运行时出现了错误 HOT 4
- mitoz all: error: the following arguments are required: --fq1, --requiring_taxa HOT 1
- overlap is 0 HOT 9
- Issue with Installation HOT 1
- the result assembled mito genome have more than one contigs HOT 4
- Missing tRNA annotation HOT 8
- MitoZ cannot access input files - Singularity on HPC HOT 4
- A typo in the 'help' section HOT 1
- Nanopore reads HOT 4
- summary.txt empty when no CDS genes annotated HOT 4
- Error during annotation
- Mitogenome sequences identification HOT 3
- Parameter combination recommendations
- extract mitchonderial genome from NGS reads about 90 GB
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