Comments (3)
Hi SongCU,
Thank you very much for the suggestion!
I would test it and see if it works for most cases (because sometimes Perl=5.2.6 worked for me, but sometimes not, even on the same machine). If it works, then I would update the method.
@other users, you are also encouraged to drop a comment here to let me know whether this method works for you or not. Thanks!
Cheers
Guanliang
from mitoz.
hi @linzhi2013 .
I have struggled fighting errors from cpamn during visualizing step.
However when I installed MITOZ3 with yml.file
above, it worked without any error messages!
I agree that there could be a crash when using different perl version.
Anyway thanks for the wonderful program!
Best wishes.
Paul.
from mitoz.
hi @linzhi2013 . I have struggled fighting errors from cpamn during visualizing step.
However when I installed MITOZ3 with
yml.file
above, it worked without any error messages! I agree that there could be a crash when using different perl version.Anyway thanks for the wonderful program!
Best wishes. Paul.
Hi Paul,
Thanks for your comment!
When I tested Perl 5.32, I got new problems, and sometimes it is still very annoying to deal with. Therefore, I have provided the Singularity, Docker, and Conda-Pack versions of MitoZ (https://github.com/linzhi2013/MitoZ/wiki/Installation#4-conda-pack). Hope it's easier for the users to install MitoZ with them since they have packaged (almost) everything all together.
Cheers
Guanliang
from mitoz.
Related Issues (20)
- Issue with tRNA annotation HOT 2
- Error in subcommand annoate in the Singularity image MitoZv3.4. HOT 2
- Problem with annotation HOT 1
- 在select_sequences_by_gene_completeness函数中,运行时出现了错误 HOT 4
- mitoz all: error: the following arguments are required: --fq1, --requiring_taxa HOT 1
- overlap is 0 HOT 9
- Issue with Installation HOT 1
- the result assembled mito genome have more than one contigs HOT 4
- Missing tRNA annotation HOT 8
- MitoZ cannot access input files - Singularity on HPC HOT 4
- A typo in the 'help' section HOT 1
- Nanopore reads HOT 4
- summary.txt empty when no CDS genes annotated HOT 4
- Error during annotation
- Mitogenome sequences identification HOT 3
- Parameter combination recommendations HOT 1
- extract mitchonderial genome from NGS reads about 90 GB HOT 7
- Missing genes and did not produce circular mitogenome HOT 7
- Endless read from file HOT 11
- fastq format HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mitoz.