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mcmanus_ant1

RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"

meripseqpipe

MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.

metadata-in-rcr

code and data related to "The Role of Metadata in Reproducible Computational Research"

mie

Mie theory for electromagnetic scattering by spherical objects

miso-lims

MISO: An open-source LIMS for NGS sequencing centres

mito-conservation-index

mitomap_concordance

a whirlwind tour through the exiting world of mitochondrial mutations

mitomaster

Mitomaster, the webapp

ml4bfx

Machine Learning for Bioinformatics Coursework

ml_fish_seg

r scipt that uses ml to segment fish/ label/ ruler in a singel image into 3 seprate images

moma_collection

The Museum of Modern Art (MoMA) collection data

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

mvgsea

Multiplevariate GSEA using logistic regression models

nugget

minimalist wget clone written in node. HTTP GET files and downloads them into the current directory

ontopop

how popular are ontologies

opencode_opendata_termcounts

lens.org counts of "open data" and "open code" in the abstract

opensnp

Can we validate published genome-wide association studies of common human phenotypes using the relatively small volunteered data publicly available in OpenSNP? Binderized!

pas_premium

What do people pay to live in the Penn Alexander Catchment?

phl-opa

A thin wrapper for the Philadelphia Office of Property Assessment API

phylotree_lib

Phython library to manipulate excel files from PhyloTree.org

placenta

Reproduction of Leiby et al. placental microbiome paper

pubmed_corpus_term_popularity

View relative frequencies of words in corpuses and Pubmed

python.tmbundle

TextMate support for Python

pyvcf

A Variant Call Format reader for Python.

qualtricssurvey

r-base-feedstock

A conda-smithy repository for r-base.

rchive

An comprehensive archive of genomic data structured and stored as R data objects

remotelessdockernotes

notes on localizing remote dependencies for reproducible docker builds

replacescience

WordReplacerII files for turning science articles into something far, far more trivial

reproducibility-guide