Comments (3)
These errors are occurring because there is an error in the code for loading data in HiFive through the analysis script. It should be fixed with this pull request:
kundajelab/genomedisco#2
from 3dchromatin_replicateqc.
Just as an update, hifive has gone through some changes and re-factoring, and these have been incorporated into 3DChromatin_ReplicateQC.
Please re-clone this repository (3DChromatin_ReplicateQC) and re-run the install script, to get the latest version.
from 3dchromatin_replicateqc.
Please make sure to download the latest version of the code. Re-clone this repository (3DChromatin_ReplicateQC) and re-run the install script.
For now, I will close this issue, as it seems that the errors are fixed. Please re-open if you are still having trouble running the code.
from 3dchromatin_replicateqc.
Related Issues (16)
- Rscript: command not found HOT 1
- HiC-Spector HOT 3
- Contact map and bins
- Potential issue in wrappers/QuASAR/data_to_hifive.py HOT 3
- ValueError when running 3DChromatin_ReplicateQC concordance HOT 2
- cannot install HiCRep HOT 1
- The format of my input files are the same as your example files, but it can't run. HOT 5
- installing error: Couldn't find index page for 'setuptools_cython' (maybe misspelled?) HOT 2
- prep function deprecated in the latest HiCRep version HOT 2
- Problems installing HOT 10
- AttributeError when running example script HOT 8
- Suggestions to improve the installation HOT 2
- Summary tables not created when HiRep gives NaN back HOT 2
- Support cooler files HOT 1
- QuASAR-QC output folder HOT 3
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