installing error: Couldn't find index page for 'setuptools_cython' (maybe misspelled?) about 3dchromatin_replicateqc HOT 2 CLOSED

Hi @YiweiNiu !
It seems the problem occurs when trying to install hifive https://github.com/bxlab/hifive, which requires python 2.7. I would check with them about any updates on how to install their code. In the meantime, if you do want to try the rest of the methods implemented here, you can comment out the section that refers to Quasar in the installation file at https://github.com/kundajelab/3DChromatin_ReplicateQC/blob/master/install_scripts/install_3DChromatin_ReplicateQC.sh (lines 123-132).

Please let me know how else I can help.

Thanks,
Oana

from 3dchromatin_replicateqc.

Hi Oana,

Thank you for your quick reply!

Finally I installed hifive through conda. By the way, hirep had been removed from bioconductor.

As 3DChromatin_ReplicateQC includes multiple Python/R packages, I suggest that you could pack them through conda or docker.

Bests,
Yiwei

from 3dchromatin_replicateqc.